Codes

A computer vision algorithm for extracting quantitative phenotypes

A custom MATLAB script that extracts various behavioral and morphological features to track phenotypic changes during the aging process. Briefly, we performed background subtraction and image segmentation to identify and determine the location of live individuals

Data Example

Data Set

Automated Imaging Platform GUI

MATLAB code for communicating with a Arduino board and a camera

Reference paper

Y. Cho, R. A. Jonas-Closs, Lev. Y. Yampolsky, M. W. Kirschner, and L. Peshkin, “Intelligent high-throughput intervention testing platform in Daphnia”, Aging Cell, 2022, DOI: 10.1111/acel.13571 :link: